Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm23931-201ENSMUST00000103842 109 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm5187-201ENSMUST00000117317 991 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm5940-201ENSMUST00000117582 1068 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm12384-201ENSMUST00000119228 919 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm24644-201ENSMUST00000157114 139 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm5370-201ENSMUST00000187187 574 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm7399-201ENSMUST00000032395 858 ntBASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.48
Col28a1Q2UY11 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm5687-201ENSMUST00000118252 640 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Itm2b-204ENSMUST00000228637 783 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.02□□□□□ -0.49
Col28a1Q2UY11 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Col28a1Q2UY11 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col28a1Q2UY11 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms