Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Sox9Q04887 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC12.79□□□□□ -0.36
Sox9Q04887 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm9025-201ENSMUST00000122415 1575 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 AC113060.1-201ENSMUST00000225689 1573 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC12.79□□□□□ -0.36
Sox9Q04887 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Sox9Q04887 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm45856-201ENSMUST00000212752 416 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm19009-201ENSMUST00000223072 823 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Sox9Q04887 Gm37861-201ENSMUST00000193534 2869 ntBASIC12.79□□□□□ -0.36
Sox9Q04887 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Sox9Q04887 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Sox9Q04887 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Sox9Q04887 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm11949-201ENSMUST00000117640 372 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm23045-201ENSMUST00000175041 96 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Gm8343-201ENSMUST00000182705 994 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm3318-201ENSMUST00000217604 1183 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.78□□□□□ -0.36
Sox9Q04887 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Sox9Q04887 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Sox9Q04887 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Sox9Q04887 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Sox9Q04887 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Sox9Q04887 Gm26013-201ENSMUST00000104404 119 ntBASIC12.77□□□□□ -0.37
Sox9Q04887 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 72.9 ms