Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.69□□□□□ -0.22
Col6a1Q04857 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col6a1Q04857 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col6a1Q04857 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC13.68□□□□□ -0.22
Col6a1Q04857 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col6a1Q04857 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Col6a1Q04857 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm12291-201ENSMUST00000121627 311 ntBASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC13.67□□□□□ -0.22
Col6a1Q04857 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm19287-201ENSMUST00000203190 358 ntBASIC13.67□□□□□ -0.22
Col6a1Q04857 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col6a1Q04857 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col6a1Q04857 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col6a1Q04857 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Col6a1Q04857 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms