Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Msx2Q03358 Mir7654-201ENSMUST00000185082 70 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Gm7446-201ENSMUST00000221035 1240 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC11.99□□□□□ -0.49
Msx2Q03358 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Msx2Q03358 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.99□□□□□ -0.49
Msx2Q03358 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.99□□□□□ -0.49
Msx2Q03358 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Msx2Q03358 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm13123-201ENSMUST00000122173 492 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC11.98□□□□□ -0.49
Msx2Q03358 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm42599-201ENSMUST00000201308 469 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.98□□□□□ -0.49
Msx2Q03358 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC11.98□□□□□ -0.49
Msx2Q03358 AC238811.3-201ENSMUST00000225422 709 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Msx2Q03358 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm44086-201ENSMUST00000203251 2349 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.98□□□□□ -0.49
Msx2Q03358 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msx2Q03358 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Msx2Q03358 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msx2Q03358 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.97□□□□□ -0.49
Msx2Q03358 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Msx2Q03358 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Msx2Q03358 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.97□□□□□ -0.49
Msx2Q03358 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11.97□□□□□ -0.49
Msx2Q03358 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msx2Q03358 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms