Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC13.87□□□□□ -0.19
Col2a1P28481 Gm3150-201ENSMUST00000166418 204 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm21092-201ENSMUST00000178995 955 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Ighv5-11-201ENSMUST00000193354 371 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm45113-201ENSMUST00000207518 165 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm44545-201ENSMUST00000208262 746 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm45550-201ENSMUST00000209380 946 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.87□□□□□ -0.19
Col2a1P28481 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Col2a1P28481 Acot6-202ENSMUST00000222921 3622 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Col2a1P28481 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.86□□□□□ -0.19
Col2a1P28481 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm14314-201ENSMUST00000118225 1015 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gm15566-201ENSMUST00000121130 590 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm19459-201ENSMUST00000176240 835 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gm6114-201ENSMUST00000182472 968 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Mir8115-201ENSMUST00000184992 119 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gm5852-201ENSMUST00000194119 1021 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gm42599-201ENSMUST00000201308 469 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC13.86□□□□□ -0.19
Col2a1P28481 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Col2a1P28481 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Col2a1P28481 Gm9796-201ENSMUST00000062249 2250 ntBASIC13.86□□□□□ -0.19
Col2a1P28481 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.85□□□□□ -0.19
Col2a1P28481 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Col2a1P28481 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Col2a1P28481 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Zfp125-201ENSMUST00000079237 2488 ntBASIC13.85□□□□□ -0.19
Col2a1P28481 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Gm12208-201ENSMUST00000122004 163 ntBASIC13.85□□□□□ -0.19
Col2a1P28481 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC13.85□□□□□ -0.19
Col2a1P28481 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 AC113082.1-201ENSMUST00000217324 327 ntBASIC13.85□□□□□ -0.19
Col2a1P28481 AC153929.1-201ENSMUST00000219009 303 ntBASIC13.85□□□□□ -0.19
Col2a1P28481 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC13.85□□□□□ -0.19
Col2a1P28481 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Col2a1P28481 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Col2a1P28481 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
Col2a1P28481 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Col2a1P28481 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms