Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Gm19692-201ENSMUST00000203856 2084 ntBASIC13.38□□□□□ -0.27
RaraP11416 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC13.38□□□□□ -0.27
RaraP11416 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
RaraP11416 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.37□□□□□ -0.27
RaraP11416 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC13.37□□□□□ -0.27
RaraP11416 Gm9083-201ENSMUST00000120423 819 ntBASIC13.37□□□□□ -0.27
RaraP11416 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Gm8738-201ENSMUST00000172606 329 ntBASIC13.37□□□□□ -0.27
RaraP11416 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Gm43818-201ENSMUST00000200605 466 ntBASIC13.37□□□□□ -0.27
RaraP11416 Gm18584-201ENSMUST00000203098 964 ntBASIC13.37□□□□□ -0.27
RaraP11416 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
RaraP11416 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
RaraP11416 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Gm43579-201ENSMUST00000202387 1307 ntBASIC13.37□□□□□ -0.27
RaraP11416 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
RaraP11416 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RaraP11416 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RaraP11416 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
RaraP11416 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.36□□□□□ -0.27
RaraP11416 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
RaraP11416 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RaraP11416 Gm11478-201ENSMUST00000117851 599 ntBASIC13.36□□□□□ -0.27
RaraP11416 Gm12390-201ENSMUST00000117897 397 ntBASIC13.36□□□□□ -0.27
RaraP11416 Gm44405-201ENSMUST00000198952 126 ntBASIC13.36□□□□□ -0.27
RaraP11416 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.36□□□□□ -0.27
RaraP11416 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.36□□□□□ -0.27
RaraP11416 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RaraP11416 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RaraP11416 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RaraP11416 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC13.36□□□□□ -0.27
RaraP11416 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RaraP11416 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.36□□□□□ -0.27
RaraP11416 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.35□□□□□ -0.27
RaraP11416 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.35□□□□□ -0.27
RaraP11416 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RaraP11416 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RaraP11416 Gm7809-201ENSMUST00000153199 742 ntBASIC13.35□□□□□ -0.27
RaraP11416 Gm25261-201ENSMUST00000157416 134 ntBASIC13.35□□□□□ -0.27
RaraP11416 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms