Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Lire1P11260 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Lire1P11260 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Lire1P11260 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Gm8810-201ENSMUST00000172895 754 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Gm4271-201ENSMUST00000174444 973 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.83□□□□□ -0.52
Lire1P11260 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC11.83□□□□□ -0.52
Lire1P11260 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Lire1P11260 Gm8598-201ENSMUST00000221184 836 ntBASIC11.83□□□□□ -0.52
Lire1P11260 CT009713.10-202ENSMUST00000225734 696 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Lire1P11260 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Bcl2-202ENSMUST00000189999 2841 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Lire1P11260 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Gm45242-201ENSMUST00000210666 2129 ntBASIC11.83□□□□□ -0.52
Lire1P11260 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC11.83□□□□□ -0.52
Lire1P11260 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Lire1P11260 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Lire1P11260 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Lire1P11260 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.82□□□□□ -0.52
Lire1P11260 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Gm17330-201ENSMUST00000221047 165 ntBASIC11.82□□□□□ -0.52
Lire1P11260 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Lire1P11260 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Lire1P11260 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
Lire1P11260 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Gm5860-202ENSMUST00000151038 1711 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Lire1P11260 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Lire1P11260 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Lire1P11260 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Lire1P11260 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC11.81□□□□□ -0.52
Lire1P11260 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Lire1P11260 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Nrf1-206ENSMUST00000115204 2047 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.81□□□□□ -0.52
Lire1P11260 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC11.81□□□□□ -0.52
Lire1P11260 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.81□□□□□ -0.52
Lire1P11260 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Lire1P11260 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms