Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
TnfP06804 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
TnfP06804 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
TnfP06804 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
TnfP06804 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
TnfP06804 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.11□□□□□ -0.31
TnfP06804 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
TnfP06804 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
TnfP06804 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
TnfP06804 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
TnfP06804 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC13.11□□□□□ -0.31
TnfP06804 Gm16481-201ENSMUST00000119074 1227 ntBASIC13.11□□□□□ -0.31
TnfP06804 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
TnfP06804 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.11□□□□□ -0.31
TnfP06804 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC13.11□□□□□ -0.31
TnfP06804 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.11□□□□□ -0.31
TnfP06804 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 CT025694.1-201ENSMUST00000226188 934 ntBASIC13.11□□□□□ -0.31
TnfP06804 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC13.11□□□□□ -0.31
TnfP06804 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC13.11□□□□□ -0.31
TnfP06804 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC13.11□□□□□ -0.31
TnfP06804 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
TnfP06804 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Gm23200-201ENSMUST00000104379 132 ntBASIC13.1□□□□□ -0.31
TnfP06804 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Rprl1-201ENSMUST00000158050 327 ntBASIC13.1□□□□□ -0.31
TnfP06804 Gm9630-201ENSMUST00000178304 885 ntBASIC13.1□□□□□ -0.31
TnfP06804 Gm27552-201ENSMUST00000183351 62 ntBASIC13.1□□□□□ -0.31
TnfP06804 Gm27844-201ENSMUST00000183613 62 ntBASIC13.1□□□□□ -0.31
TnfP06804 AY036118-201ENSMUST00000200021 923 ntBASIC13.1□□□□□ -0.31
TnfP06804 Gm18753-201ENSMUST00000201000 566 ntBASIC13.1□□□□□ -0.31
TnfP06804 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Gm18730-201ENSMUST00000218038 343 ntBASIC13.1□□□□□ -0.31
TnfP06804 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.1□□□□□ -0.31
TnfP06804 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.1□□□□□ -0.31
TnfP06804 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
TnfP06804 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
TnfP06804 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.1□□□□□ -0.31
TnfP06804 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.1□□□□□ -0.31
TnfP06804 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
TnfP06804 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
TnfP06804 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
TnfP06804 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms