Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ntrk2-204ENSMUST00000224259 3049 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm24934-201ENSMUST00000103764 111 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.12□□□□□ -0.47
Chd3B1AR17 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd3B1AR17 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chd3B1AR17 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.11□□□□□ -0.47
Chd3B1AR17 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.11□□□□□ -0.47
Chd3B1AR17 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.11□□□□□ -0.47
Chd3B1AR17 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd3B1AR17 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd3B1AR17 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Chd3B1AR17 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Gm11989-201ENSMUST00000117240 672 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Gm11362-201ENSMUST00000118838 850 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 B9d1os-201ENSMUST00000137010 674 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd3B1AR17 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.1□□□□□ -0.47
Chd3B1AR17 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC12.1□□□□□ -0.47
Chd3B1AR17 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.1□□□□□ -0.47
Chd3B1AR17 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 87.9 ms