Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cdc40Q9DC48 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC11.55□□□□□ -0.56
Cdc40Q9DC48 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdc40Q9DC48 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdc40Q9DC48 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.55□□□□□ -0.56
Cdc40Q9DC48 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdc40Q9DC48 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm25668-201ENSMUST00000157700 129 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm29199-201ENSMUST00000187766 775 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Gm7993-201ENSMUST00000200970 1384 ntBASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdc40Q9DC48 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm11964-201ENSMUST00000120982 444 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm13316-201ENSMUST00000140537 691 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm21769-201ENSMUST00000211922 111 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm30285-201ENSMUST00000214614 422 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdc40Q9DC48 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdc40Q9DC48 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdc40Q9DC48 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC11.52□□□□□ -0.57
Cdc40Q9DC48 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdc40Q9DC48 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms