Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gm26927-201ENSMUST00000182385 965 ntBASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tyms-ps-201ENSMUST00000219550 915 ntBASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sh3rf1Q69ZI1 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sh3rf1Q69ZI1 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm11793-201ENSMUST00000120433 981 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm13813-201ENSMUST00000120998 787 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm18935-201ENSMUST00000212692 664 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Snora73a-201ENSMUST00000082453 205 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm24526-201ENSMUST00000082921 158 ntBASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sh3rf1Q69ZI1 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sh3rf1Q69ZI1 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms