Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim40Q3UWA4 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Gm18307-201ENSMUST00000206864 949 ntBASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ldb3-207ENSMUST00000227819 1499 ntBASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim40Q3UWA4 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gm13689-201ENSMUST00000119360 685 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Ldha-ps-201ENSMUST00000119390 995 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gm16215-201ENSMUST00000161990 637 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 AC156560.2-201ENSMUST00000221232 264 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim40Q3UWA4 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm45776-201ENSMUST00000212366 1522 ntBASIC11.6□□□□□ -0.55
Trim40Q3UWA4 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms