Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 AC158777.1-201ENSMUST00000226216 1724 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col17a1Q07563 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col17a1Q07563 Gm44711-201ENSMUST00000205414 1264 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC18.61■□□□□ 0.57
Col17a1Q07563 AC093022.5-201ENSMUST00000226841 1079 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Cbx3-ps5-201ENSMUST00000091545 544 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 n-R5s71-201ENSMUST00000093668 119 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 Cbx3-ps2-201ENSMUST00000099421 544 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col17a1Q07563 Retreg1-206ENSMUST00000228306 1430 ntBASIC18.61■□□□□ 0.57
Col17a1Q07563 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
Col17a1Q07563 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm8914-201ENSMUST00000101396 1035 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm5071-201ENSMUST00000104922 1035 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm1826-201ENSMUST00000118646 1162 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm20493-201ENSMUST00000173706 213 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm17782-201ENSMUST00000174345 880 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC18.6■□□□□ 0.57
Col17a1Q07563 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Rps14-201ENSMUST00000025511 683 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Gm5072-201ENSMUST00000063726 1035 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Col17a1Q07563 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC18.6■□□□□ 0.57
Col17a1Q07563 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col17a1Q07563 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Gm6946-201ENSMUST00000182237 987 ntBASIC18.59■□□□□ 0.57
Col17a1Q07563 Capsl-202ENSMUST00000226688 739 ntBASIC18.59■□□□□ 0.57
Col17a1Q07563 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col17a1Q07563 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col17a1Q07563 Gm22495-201ENSMUST00000104492 126 ntBASIC18.58■□□□□ 0.57
Col17a1Q07563 Gm15831-201ENSMUST00000156195 516 ntTSL 2 BASIC18.58■□□□□ 0.57
Col17a1Q07563 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC18.58■□□□□ 0.57
Col17a1Q07563 Gm9644-201ENSMUST00000212828 1183 ntBASIC18.58■□□□□ 0.57
Col17a1Q07563 CT573047.1-201ENSMUST00000223652 851 ntBASIC18.58■□□□□ 0.57
Col17a1Q07563 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Gm43167-201ENSMUST00000202001 1606 ntBASIC18.58■□□□□ 0.57
Col17a1Q07563 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Col17a1Q07563 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col17a1Q07563 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Col17a1Q07563 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm12912-201ENSMUST00000121596 1381 ntBASIC18.58■□□□□ 0.56
Col17a1Q07563 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Snx10-202ENSMUST00000114439 968 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm16209-201ENSMUST00000118457 627 ntBASIC18.58■□□□□ 0.56
Col17a1Q07563 Gm10171-201ENSMUST00000126220 628 ntBASIC18.58■□□□□ 0.56
Col17a1Q07563 Map1lc3b-205ENSMUST00000181948 766 ntTSL 2 BASIC18.58■□□□□ 0.56
Col17a1Q07563 Zcwpw2-203ENSMUST00000187803 372 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms