Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm13611-201ENSMUST00000118269 318 ntBASIC10.73□□□□□ -0.69
Nkx3-1P97436 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm8546-201ENSMUST00000178288 1264 ntBASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 AC137842.1-201ENSMUST00000227896 2064 ntBASIC10.73□□□□□ -0.69
Nkx3-1P97436 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Nkx3-1P97436 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm5638-201ENSMUST00000118618 1258 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm13394-201ENSMUST00000121658 1000 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 AY036118-201ENSMUST00000200021 923 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 AU022133-201ENSMUST00000200601 873 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 AC154305.4-201ENSMUST00000224520 614 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 AC163667.3-201ENSMUST00000225774 222 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm5385-201ENSMUST00000118988 1559 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC10.72□□□□□ -0.69
Nkx3-1P97436 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC10.72□□□□□ -0.69
Nkx3-1P97436 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm23949-201ENSMUST00000104027 127 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm15711-201ENSMUST00000118889 535 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm12380-201ENSMUST00000119012 544 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 n-R5s14-201ENSMUST00000122688 107 ntBASIC10.71□□□□□ -0.69
Nkx3-1P97436 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC10.71□□□□□ -0.69
Nkx3-1P97436 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms