Protein–RNA interactions for Protein: P59240

Nphp4, Nephrocystin-4, mousemouse

Predictions only

Length 1,425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nphp4P59240 Gm13910-201ENSMUST00000121752 1428 ntBASIC16.63■□□□□ 0.25
Nphp4P59240 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Nphp4P59240 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nphp4P59240 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Nphp4P59240 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Nphp4P59240 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nphp4P59240 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nphp4P59240 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Nphp4P59240 Gm9387-201ENSMUST00000098624 1320 ntBASIC16.63■□□□□ 0.25
Nphp4P59240 Gm44758-201ENSMUST00000206096 2068 ntBASIC16.63■□□□□ 0.25
Nphp4P59240 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Gm22711-201ENSMUST00000116890 133 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Gm8731-201ENSMUST00000118088 412 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Gm9192-201ENSMUST00000183221 985 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 AC129219.2-201ENSMUST00000224324 701 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Nphp4P59240 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
Nphp4P59240 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Gm44999-201ENSMUST00000207456 1493 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Gm19287-201ENSMUST00000203190 358 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 AC112945.1-201ENSMUST00000226413 514 ntBASIC16.62■□□□□ 0.25
Nphp4P59240 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Nphp4P59240 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Nphp4P59240 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC16.61■□□□□ 0.25
Nphp4P59240 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Nphp4P59240 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Nphp4P59240 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm15881-201ENSMUST00000148792 942 ntBASIC16.61■□□□□ 0.25
Nphp4P59240 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm22144-201ENSMUST00000157402 102 ntBASIC16.61■□□□□ 0.25
Nphp4P59240 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
Nphp4P59240 Gm44551-201ENSMUST00000208804 171 ntBASIC16.61■□□□□ 0.25
Nphp4P59240 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Nphp4P59240 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Nphp4P59240 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC16.6■□□□□ 0.25
Nphp4P59240 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.6■□□□□ 0.25
Nphp4P59240 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Nphp4P59240 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Nphp4P59240 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Nphp4P59240 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Nphp4P59240 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC16.6■□□□□ 0.25
Nphp4P59240 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC16.6■□□□□ 0.25
Nphp4P59240 Gm11667-201ENSMUST00000119828 486 ntBASIC16.6■□□□□ 0.25
Nphp4P59240 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC16.6■□□□□ 0.25
Nphp4P59240 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC16.6■□□□□ 0.25
Nphp4P59240 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC16.6■□□□□ 0.25
Nphp4P59240 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms