Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Gm6771-201ENSMUST00000182716 1001 ntBASIC18.75■□□□□ 0.59
Cux1P53564 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Gm3028-201ENSMUST00000213805 1119 ntBASIC18.75■□□□□ 0.59
Cux1P53564 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Cux1P53564 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC18.74■□□□□ 0.59
Cux1P53564 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Cux1P53564 Gm9630-201ENSMUST00000178304 885 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Gm9645-201ENSMUST00000197131 792 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cux1P53564 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 AC166341.2-201ENSMUST00000220571 120 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cux1P53564 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Gm5879-201ENSMUST00000089501 1209 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Gm8155-201ENSMUST00000216363 1612 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC18.74■□□□□ 0.59
Cux1P53564 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Cux1P53564 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC18.74■□□□□ 0.59
Cux1P53564 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Cux1P53564 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Cux1P53564 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
Cux1P53564 Gm5100-201ENSMUST00000195631 589 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Gm8342-201ENSMUST00000209839 757 ntBASIC18.74■□□□□ 0.59
Cux1P53564 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC18.74■□□□□ 0.59
Cux1P53564 Gm3619-201ENSMUST00000219947 775 ntBASIC18.74■□□□□ 0.59
Cux1P53564 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cux1P53564 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC18.73■□□□□ 0.59
Cux1P53564 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC18.73■□□□□ 0.59
Cux1P53564 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC18.73■□□□□ 0.59
Cux1P53564 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Gm15744-201ENSMUST00000161734 213 ntBASIC18.73■□□□□ 0.59
Cux1P53564 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 Gm44506-201ENSMUST00000206278 965 ntBASIC18.73■□□□□ 0.59
Cux1P53564 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC18.73■□□□□ 0.59
Cux1P53564 Gm19009-201ENSMUST00000223072 823 ntBASIC18.73■□□□□ 0.59
Cux1P53564 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Cux1P53564 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cux1P53564 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cux1P53564 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cux1P53564 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cux1P53564 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cux1P53564 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 84 ms