Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.38□□□□□ -0.11
Traf1P39428 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Traf1P39428 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Traf1P39428 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC14.37□□□□□ -0.11
Traf1P39428 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Gm13996-201ENSMUST00000118456 430 ntBASIC14.37□□□□□ -0.11
Traf1P39428 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Gm6963-201ENSMUST00000147879 379 ntBASIC14.37□□□□□ -0.11
Traf1P39428 Gm5070-201ENSMUST00000177599 862 ntBASIC14.37□□□□□ -0.11
Traf1P39428 Gm18827-201ENSMUST00000188341 790 ntBASIC14.37□□□□□ -0.11
Traf1P39428 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Traf1P39428 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Traf1P39428 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Traf1P39428 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Gm45495-201ENSMUST00000200940 1700 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Traf1P39428 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.36□□□□□ -0.11
Traf1P39428 Gm11439-201ENSMUST00000118598 409 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Gm4760-201ENSMUST00000119663 1030 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Gm14277-201ENSMUST00000121195 360 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.36□□□□□ -0.11
Traf1P39428 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Gm25700-201ENSMUST00000177693 110 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Gm16505-201ENSMUST00000179981 232 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Traf1P39428 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.36□□□□□ -0.11
Traf1P39428 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Gm19187-201ENSMUST00000206781 892 ntBASIC14.36□□□□□ -0.11
Traf1P39428 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Traf1P39428 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Traf1P39428 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Traf1P39428 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Traf1P39428 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Traf1P39428 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms