Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
Msx1P13297 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.95□□□□□ -0.5
Msx1P13297 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.95□□□□□ -0.5
Msx1P13297 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.95□□□□□ -0.5
Msx1P13297 Gm45003-201ENSMUST00000205875 2158 ntBASIC11.95□□□□□ -0.5
Msx1P13297 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.95□□□□□ -0.5
Msx1P13297 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
Msx1P13297 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Msx1P13297 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Msx1P13297 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Msx1P13297 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Msx1P13297 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Msx1P13297 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Gm38355-201ENSMUST00000192514 1570 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm14028-201ENSMUST00000117434 479 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm14233-201ENSMUST00000149576 439 ntTSL 3 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm8738-201ENSMUST00000172606 329 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Gm43947-201ENSMUST00000203019 959 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Gm6681-201ENSMUST00000205215 607 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Gm272-201ENSMUST00000222073 919 ntBASIC11.94□□□□□ -0.5
Msx1P13297 AC154305.4-201ENSMUST00000224520 614 ntBASIC11.94□□□□□ -0.5
Msx1P13297 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.94□□□□□ -0.5
Msx1P13297 Nup43-201ENSMUST00000040135 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.94□□□□□ -0.5
Msx1P13297 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.94□□□□□ -0.5
Msx1P13297 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Msx1P13297 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Msx1P13297 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.93□□□□□ -0.5
Msx1P13297 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.93□□□□□ -0.5
Msx1P13297 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 A430018G15Rik-201ENSMUST00000124210 1314 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Msx1P13297 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 2300003K06Rik-201ENSMUST00000105054 1265 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Msx1P13297 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Msx1P13297 Gm14130-201ENSMUST00000118417 987 ntBASIC11.93□□□□□ -0.5
Msx1P13297 Gm1866-201ENSMUST00000120701 477 ntBASIC11.93□□□□□ -0.5
Msx1P13297 Gm15782-201ENSMUST00000121073 445 ntBASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms