Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm15744-201ENSMUST00000161734 213 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Col5a1O88207 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Gm18463-201ENSMUST00000207258 474 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Gm4157-201ENSMUST00000211647 679 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 n-R5s211-201ENSMUST00000093689 119 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col5a1O88207 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Gm15784-201ENSMUST00000120260 1462 ntBASIC11.03□□□□□ -0.64
Col5a1O88207 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Col5a1O88207 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col5a1O88207 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col5a1O88207 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col5a1O88207 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col5a1O88207 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Col5a1O88207 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC11.02□□□□□ -0.64
Col5a1O88207 Gm12218-201ENSMUST00000117666 399 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC11.02□□□□□ -0.64
Col5a1O88207 Gm37299-201ENSMUST00000193951 826 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Gm43752-201ENSMUST00000198475 697 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Gm42657-201ENSMUST00000201746 211 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Gm9797-202ENSMUST00000218003 294 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
Col5a1O88207 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Gm44292-201ENSMUST00000205194 2364 ntBASIC11.02□□□□□ -0.64
Col5a1O88207 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col5a1O88207 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm13263-201ENSMUST00000121271 838 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC11.02□□□□□ -0.65
Col5a1O88207 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC11.02□□□□□ -0.65
Col5a1O88207 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm27910-201ENSMUST00000185004 107 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm5100-201ENSMUST00000195631 589 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm18706-201ENSMUST00000210053 1066 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC11.02□□□□□ -0.65
Col5a1O88207 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.02□□□□□ -0.65
Col5a1O88207 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Col5a1O88207 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col5a1O88207 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 85.9 ms