Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Lima1Q9ERG0 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm11814-201ENSMUST00000119515 929 ntBASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm12291-201ENSMUST00000121627 311 ntBASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Lima1Q9ERG0 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm8810-201ENSMUST00000172895 754 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm24196-201ENSMUST00000179161 110 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm8652-201ENSMUST00000181363 964 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Lima1Q9ERG0 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Slc39a6-201ENSMUST00000070726 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gm14760-201ENSMUST00000121831 999 ntBASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gm13123-201ENSMUST00000122173 492 ntBASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gm37922-201ENSMUST00000195596 455 ntBASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms