Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Mir6979-201ENSMUST00000183927 56 ntBASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Gm17812-201ENSMUST00000204935 318 ntBASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Abhd11os-203ENSMUST00000222613 363 ntBASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Sf3b1Q99NB9 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm14644-201ENSMUST00000116671 647 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm24749-201ENSMUST00000157838 343 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm9230-201ENSMUST00000188228 532 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Ighv5-7-201ENSMUST00000192302 244 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm3786-201ENSMUST00000202659 378 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 AC154747.3-201ENSMUST00000224471 3470 ntBASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Sf3b1Q99NB9 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm12566-201ENSMUST00000121479 359 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 B9d1os-201ENSMUST00000137010 674 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm25732-201ENSMUST00000175168 60 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm42937-201ENSMUST00000197360 752 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 CT025694.1-201ENSMUST00000226188 934 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Sf3b1Q99NB9 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms