Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gm18294-201ENSMUST00000176980 1748 ntBASIC13.61□□□□□ -0.23
Col11a1Q61245 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm9034-201ENSMUST00000182071 1005 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm3433-201ENSMUST00000210149 1058 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm6390-201ENSMUST00000215034 589 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm34655-202ENSMUST00000215259 877 ntTSL 3 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Gm18499-201ENSMUST00000220808 1021 ntBASIC13.6□□□□□ -0.23
Col11a1Q61245 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
Col11a1Q61245 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col11a1Q61245 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm21759-201ENSMUST00000178345 1828 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm44056-201ENSMUST00000204623 1427 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm9507-202ENSMUST00000180157 654 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Tmbim7-204ENSMUST00000198739 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm6450-201ENSMUST00000200896 574 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC13.59□□□□□ -0.23
Col11a1Q61245 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.59□□□□□ -0.23
Col11a1Q61245 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm6655-201ENSMUST00000201932 1309 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 Gm19680-201ENSMUST00000095050 1513 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.59□□□□□ -0.23
Col11a1Q61245 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col11a1Q61245 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Col11a1Q61245 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col11a1Q61245 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Col11a1Q61245 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms