Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Gm2383-201ENSMUST00000181461 807 ntBASIC14.62□□□□□ -0.07
Limch1Q3UH68 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Limch1Q3UH68 Gm43823-201ENSMUST00000197391 1808 ntBASIC14.62□□□□□ -0.07
Limch1Q3UH68 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.61□□□□□ -0.07
Limch1Q3UH68 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Gm13492-201ENSMUST00000119772 665 ntBASIC14.61□□□□□ -0.07
Limch1Q3UH68 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.61□□□□□ -0.07
Limch1Q3UH68 AC167013.1-201ENSMUST00000228592 202 ntBASIC14.61□□□□□ -0.07
Limch1Q3UH68 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.61□□□□□ -0.07
Limch1Q3UH68 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Limch1Q3UH68 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Rmrp-201ENSMUST00000157463 271 ntBASIC14.6□□□□□ -0.07
Limch1Q3UH68 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Mir5132-201ENSMUST00000175166 71 ntBASIC14.6□□□□□ -0.07
Limch1Q3UH68 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Limch1Q3UH68 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms