Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Col3a1P08121 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col3a1P08121 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Col3a1P08121 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Col3a1P08121 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col3a1P08121 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Col3a1P08121 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col3a1P08121 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col3a1P08121 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col3a1P08121 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Col3a1P08121 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.66□□□□□ -0.06
Col3a1P08121 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Col3a1P08121 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
Col3a1P08121 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Col3a1P08121 Gm6189-201ENSMUST00000164487 2082 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Gm13263-201ENSMUST00000121271 838 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC14.65□□□□□ -0.06
Col3a1P08121 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Gm4310-201ENSMUST00000177847 889 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Gm7593-201ENSMUST00000187246 644 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Gm9540-201ENSMUST00000188230 478 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Gm5714-201ENSMUST00000197343 566 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Gm43058-201ENSMUST00000197645 625 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.65□□□□□ -0.06
Col3a1P08121 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 AC166992.1-201ENSMUST00000216356 565 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 AC121960.1-201ENSMUST00000227982 564 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Gm10288-201ENSMUST00000084614 537 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.65□□□□□ -0.06
Col3a1P08121 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Col3a1P08121 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Col3a1P08121 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Col3a1P08121 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Col3a1P08121 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm24891-201ENSMUST00000104391 136 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm15432-201ENSMUST00000121106 195 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm6397-201ENSMUST00000161973 1069 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm17391-201ENSMUST00000171036 126 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm38228-201ENSMUST00000193169 1293 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 AC154849.4-201ENSMUST00000224868 365 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Gm7551-201ENSMUST00000089593 1074 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm43807-201ENSMUST00000200678 1781 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Gm21998-201ENSMUST00000117552 1308 ntBASIC14.64□□□□□ -0.07
Col3a1P08121 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
Col3a1P08121 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Col3a1P08121 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm11667-201ENSMUST00000119828 486 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC14.63□□□□□ -0.07
Col3a1P08121 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Col3a1P08121 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm6905-201ENSMUST00000205729 511 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 AC122876.1-201ENSMUST00000217619 825 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Gm4797-201ENSMUST00000219075 1283 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
Col3a1P08121 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms