Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ushbp1Q8R370 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm11222-201ENSMUST00000119005 738 ntBASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm13492-201ENSMUST00000119772 665 ntBASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm18584-201ENSMUST00000203098 964 ntBASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Gm5781-201ENSMUST00000219792 443 ntBASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Nsd1-205ENSMUST00000224693 852 ntBASIC13.96□□□□□ -0.17
Ushbp1Q8R370 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
Ushbp1Q8R370 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ushbp1Q8R370 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ushbp1Q8R370 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm9333-201ENSMUST00000205452 1323 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm24990-201ENSMUST00000157406 323 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm22902-201ENSMUST00000158488 302 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.94□□□□□ -0.18
Ushbp1Q8R370 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms