Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Vps53Q8CCB4 Gm8617-201ENSMUST00000118796 2222 ntBASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 AC166051.1-201ENSMUST00000214313 210 ntBASIC14.5□□□□□ -0.09
Vps53Q8CCB4 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.5□□□□□ -0.09
Vps53Q8CCB4 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Vps53Q8CCB4 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gm5638-201ENSMUST00000118618 1258 ntBASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gm18916-201ENSMUST00000198264 1246 ntBASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Vps53Q8CCB4 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 CT009713.10-201ENSMUST00000225013 1986 ntBASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.48□□□□□ -0.09
Vps53Q8CCB4 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC14.48□□□□□ -0.09
Vps53Q8CCB4 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.48□□□□□ -0.09
Vps53Q8CCB4 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms