Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Sh3rf1Q69ZI1 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm14350-201ENSMUST00000116642 640 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm12329-201ENSMUST00000120829 1007 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm11978-201ENSMUST00000122315 466 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm27501-201ENSMUST00000183599 107 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Gm17823-201ENSMUST00000217830 1006 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Sh3rf1Q69ZI1 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm27243-201ENSMUST00000183964 521 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm43118-201ENSMUST00000199149 775 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Ptprm-203ENSMUST00000224091 3773 ntBASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Sh3rf1Q69ZI1 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Sh3rf1Q69ZI1 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms