Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm5340-201ENSMUST00000203733 880 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm6108-201ENSMUST00000208365 367 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm30671-201ENSMUST00000214898 318 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 AC113082.1-201ENSMUST00000217324 327 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 Olfr584-201ENSMUST00000098210 964 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm5641-201ENSMUST00000091130 1488 ntBASIC13.63□□□□□ -0.23
Col11a1Q61245 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.63□□□□□ -0.23
Col11a1Q61245 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.63□□□□□ -0.23
Col11a1Q61245 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col11a1Q61245 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm5257-201ENSMUST00000121823 790 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm10807-201ENSMUST00000177134 795 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm26134-201ENSMUST00000178484 110 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col11a1Q61245 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm21358-201ENSMUST00000191645 1659 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm11470-201ENSMUST00000118868 1475 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm11619-201ENSMUST00000117474 237 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm12179-201ENSMUST00000118344 1272 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm11979-201ENSMUST00000119629 743 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm26989-201ENSMUST00000182608 749 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Gm43852-201ENSMUST00000202098 917 ntBASIC13.62□□□□□ -0.23
Col11a1Q61245 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col11a1Q61245 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col11a1Q61245 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gm8899-201ENSMUST00000214635 1332 ntBASIC13.61□□□□□ -0.23
Col11a1Q61245 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC13.61□□□□□ -0.23
Col11a1Q61245 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gm24791-201ENSMUST00000104284 131 ntBASIC13.61□□□□□ -0.23
Col11a1Q61245 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gm11783-201ENSMUST00000119549 885 ntBASIC13.61□□□□□ -0.23
Col11a1Q61245 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC13.61□□□□□ -0.23
Col11a1Q61245 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col11a1Q61245 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms