Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Limch1Q3UH68 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.65□□□□□ -0.06
Limch1Q3UH68 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Morn2-202ENSMUST00000227729 656 ntBASIC14.65□□□□□ -0.06
Limch1Q3UH68 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Limch1Q3UH68 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.64□□□□□ -0.07
Limch1Q3UH68 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm24231-201ENSMUST00000104315 133 ntBASIC14.64□□□□□ -0.07
Limch1Q3UH68 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm11964-201ENSMUST00000120982 444 ntBASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 CT025533.2-201ENSMUST00000228715 1248 ntBASIC14.64□□□□□ -0.07
Limch1Q3UH68 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Gm8228-201ENSMUST00000189949 2192 ntBASIC14.64□□□□□ -0.07
Limch1Q3UH68 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Limch1Q3UH68 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Gm11222-201ENSMUST00000119005 738 ntBASIC14.63□□□□□ -0.07
Limch1Q3UH68 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.63□□□□□ -0.07
Limch1Q3UH68 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.63□□□□□ -0.07
Limch1Q3UH68 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Limch1Q3UH68 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms