Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Gm13689-201ENSMUST00000119360 685 ntBASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Gm29127-201ENSMUST00000188304 517 ntBASIC12.1□□□□□ -0.47
Col28a1Q2UY11 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col28a1Q2UY11 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm14350-201ENSMUST00000116642 640 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm27572-201ENSMUST00000183702 255 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm42599-201ENSMUST00000201308 469 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col28a1Q2UY11 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Col28a1Q2UY11 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Col28a1Q2UY11 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm16202-201ENSMUST00000117532 544 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms