Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Tulp2-210ENSMUST00000210868 1664 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm5976-201ENSMUST00000180794 996 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm43244-201ENSMUST00000196994 1285 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm19046-201ENSMUST00000221263 1298 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 AC164556.1-201ENSMUST00000221318 751 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm26782-203ENSMUST00000227103 751 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 AC137871.1-201ENSMUST00000228278 475 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm5507-201ENSMUST00000091897 1008 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Gm43677-201ENSMUST00000198098 2378 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Col17a1Q07563 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm16283-201ENSMUST00000149935 522 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Ighv5-1-201ENSMUST00000193324 353 ntBASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm4903-201ENSMUST00000210462 405 ntBASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm19228-201ENSMUST00000214030 717 ntBASIC18.67■□□□□ 0.58
Col17a1Q07563 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Clec1b-201ENSMUST00000032262 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
Col17a1Q07563 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Gm37861-201ENSMUST00000193534 2869 ntBASIC18.67■□□□□ 0.58
Col17a1Q07563 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col17a1Q07563 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Col17a1Q07563 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Gm17709-201ENSMUST00000174536 1096 ntBASIC18.66■□□□□ 0.58
Col17a1Q07563 Cd9-ps-201ENSMUST00000174687 650 ntBASIC18.66■□□□□ 0.58
Col17a1Q07563 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Col17a1Q07563 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.66■□□□□ 0.58
Col17a1Q07563 Gm13456-201ENSMUST00000118928 1365 ntBASIC18.66■□□□□ 0.58
Col17a1Q07563 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col17a1Q07563 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Col17a1Q07563 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm45090-201ENSMUST00000208775 1148 ntBASIC18.65■□□□□ 0.58
Col17a1Q07563 AC122840.4-201ENSMUST00000221310 1285 ntTSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col17a1Q07563 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm6158-201ENSMUST00000109467 904 ntBASIC18.65■□□□□ 0.58
Col17a1Q07563 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Col17a1Q07563 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 1500015A07Rik-202ENSMUST00000184530 423 ntTSL 3 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col17a1Q07563 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col17a1Q07563 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Col17a1Q07563 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
Col17a1Q07563 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Col17a1Q07563 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms