Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
ShhQ62226 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ShhQ62226 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ShhQ62226 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ShhQ62226 Gm12922-201ENSMUST00000120626 809 ntBASIC19.39■□□□□ 0.69
ShhQ62226 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.39■□□□□ 0.69
ShhQ62226 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.39■□□□□ 0.69
ShhQ62226 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ShhQ62226 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ShhQ62226 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ShhQ62226 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ShhQ62226 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ShhQ62226 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ShhQ62226 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ShhQ62226 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ShhQ62226 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
ShhQ62226 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC19.38■□□□□ 0.69
ShhQ62226 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ShhQ62226 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
ShhQ62226 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ShhQ62226 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.37■□□□□ 0.69
ShhQ62226 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ShhQ62226 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ShhQ62226 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ShhQ62226 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ShhQ62226 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ShhQ62226 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ShhQ62226 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ShhQ62226 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ShhQ62226 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ShhQ62226 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
ShhQ62226 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC19.35■□□□□ 0.69
ShhQ62226 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.35■□□□□ 0.69
ShhQ62226 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
ShhQ62226 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ShhQ62226 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ShhQ62226 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
ShhQ62226 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ShhQ62226 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ShhQ62226 Gm27454-201ENSMUST00000185090 204 ntBASIC19.34■□□□□ 0.69
ShhQ62226 Gm40881-201ENSMUST00000223397 166 ntBASIC19.34■□□□□ 0.69
ShhQ62226 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ShhQ62226 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
ShhQ62226 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
ShhQ62226 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
ShhQ62226 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
ShhQ62226 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ShhQ62226 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.32■□□□□ 0.68
ShhQ62226 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ShhQ62226 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ShhQ62226 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ShhQ62226 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
ShhQ62226 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.31■□□□□ 0.68
ShhQ62226 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
ShhQ62226 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ShhQ62226 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.31■□□□□ 0.68
ShhQ62226 Gm45417-201ENSMUST00000209533 758 ntBASIC19.31■□□□□ 0.68
ShhQ62226 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.31■□□□□ 0.68
ShhQ62226 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ShhQ62226 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
ShhQ62226 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.3■□□□□ 0.68
ShhQ62226 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
ShhQ62226 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.29■□□□□ 0.68
ShhQ62226 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.29■□□□□ 0.68
ShhQ62226 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.29■□□□□ 0.68
ShhQ62226 Gm8495-201ENSMUST00000188740 694 ntBASIC19.29■□□□□ 0.68
ShhQ62226 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ShhQ62226 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.29■□□□□ 0.68
ShhQ62226 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ShhQ62226 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ShhQ62226 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
ShhQ62226 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.28■□□□□ 0.68
ShhQ62226 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ShhQ62226 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
ShhQ62226 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.28■□□□□ 0.68
ShhQ62226 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.28■□□□□ 0.68
ShhQ62226 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ShhQ62226 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ShhQ62226 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ShhQ62226 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms