Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Usf1Q61069 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.19■□□□□ 0.66
Usf1Q61069 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.19■□□□□ 0.66
Usf1Q61069 Gm5576-201ENSMUST00000075809 1236 ntBASIC19.19■□□□□ 0.66
Usf1Q61069 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Usf1Q61069 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usf1Q61069 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Usf1Q61069 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Usf1Q61069 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.18■□□□□ 0.66
Usf1Q61069 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usf1Q61069 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.17■□□□□ 0.66
Usf1Q61069 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.17■□□□□ 0.66
Usf1Q61069 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usf1Q61069 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC19.17■□□□□ 0.66
Usf1Q61069 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usf1Q61069 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.16■□□□□ 0.66
Usf1Q61069 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usf1Q61069 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usf1Q61069 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usf1Q61069 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.14■□□□□ 0.65
Usf1Q61069 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usf1Q61069 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.14■□□□□ 0.65
Usf1Q61069 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Usf1Q61069 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
Usf1Q61069 Gm8770-201ENSMUST00000121113 1109 ntBASIC19.13■□□□□ 0.65
Usf1Q61069 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Gm10657-201ENSMUST00000193528 1031 ntBASIC19.13■□□□□ 0.65
Usf1Q61069 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usf1Q61069 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usf1Q61069 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Usf1Q61069 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.12■□□□□ 0.65
Usf1Q61069 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Usf1Q61069 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.12■□□□□ 0.65
Usf1Q61069 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usf1Q61069 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usf1Q61069 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usf1Q61069 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usf1Q61069 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
Usf1Q61069 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.11■□□□□ 0.65
Usf1Q61069 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usf1Q61069 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.11■□□□□ 0.65
Usf1Q61069 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usf1Q61069 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.1■□□□□ 0.65
Usf1Q61069 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usf1Q61069 Gm7291-201ENSMUST00000199147 382 ntBASIC19.1■□□□□ 0.65
Usf1Q61069 Gm43173-201ENSMUST00000202246 593 ntBASIC19.1■□□□□ 0.65
Usf1Q61069 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.1■□□□□ 0.65
Usf1Q61069 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Usf1Q61069 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usf1Q61069 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.09■□□□□ 0.65
Usf1Q61069 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Usf1Q61069 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usf1Q61069 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms