Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Gm26833-201ENSMUST00000180899 440 ntBASIC21.9■■□□□ 1.1
Cxcl12P40224 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cxcl12P40224 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cxcl12P40224 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Cxcl12P40224 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cxcl12P40224 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Cxcl12P40224 Gm43060-201ENSMUST00000200621 289 ntBASIC21.89■■□□□ 1.09
Cxcl12P40224 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.89■■□□□ 1.09
Cxcl12P40224 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Cxcl12P40224 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cxcl12P40224 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cxcl12P40224 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cxcl12P40224 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
Cxcl12P40224 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cxcl12P40224 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cxcl12P40224 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cxcl12P40224 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cxcl12P40224 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cxcl12P40224 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cxcl12P40224 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.87■■□□□ 1.09
Cxcl12P40224 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cxcl12P40224 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cxcl12P40224 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.86■■□□□ 1.09
Cxcl12P40224 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Cxcl12P40224 Gm12251-201ENSMUST00000117893 792 ntBASIC21.86■■□□□ 1.09
Cxcl12P40224 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.86■■□□□ 1.09
Cxcl12P40224 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.86■■□□□ 1.09
Cxcl12P40224 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Cxcl12P40224 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Cxcl12P40224 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Cxcl12P40224 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cxcl12P40224 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cxcl12P40224 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.85■■□□□ 1.09
Cxcl12P40224 Gm37179-201ENSMUST00000194862 823 ntBASIC21.85■■□□□ 1.09
Cxcl12P40224 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.85■■□□□ 1.09
Cxcl12P40224 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cxcl12P40224 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cxcl12P40224 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Cxcl12P40224 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Gm27011-201ENSMUST00000182352 972 ntBASIC21.84■■□□□ 1.09
Cxcl12P40224 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.84■■□□□ 1.09
Cxcl12P40224 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.84■■□□□ 1.09
Cxcl12P40224 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.84■■□□□ 1.09
Cxcl12P40224 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cxcl12P40224 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Cxcl12P40224 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cxcl12P40224 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Cxcl12P40224 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cxcl12P40224 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Cxcl12P40224 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Cxcl12P40224 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Cxcl12P40224 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Cxcl12P40224 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Cxcl12P40224 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cxcl12P40224 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cxcl12P40224 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Cxcl12P40224 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.81■■□□□ 1.08
Cxcl12P40224 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cxcl12P40224 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cxcl12P40224 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Cxcl12P40224 Gm10849-201ENSMUST00000100397 618 ntBASIC21.8■■□□□ 1.08
Cxcl12P40224 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.8■■□□□ 1.08
Cxcl12P40224 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.8■■□□□ 1.08
Cxcl12P40224 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
Cxcl12P40224 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Cxcl12P40224 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cxcl12P40224 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Cxcl12P40224 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.79■■□□□ 1.08
Cxcl12P40224 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Cxcl12P40224 Gm7143-201ENSMUST00000222811 859 ntBASIC21.79■■□□□ 1.08
Cxcl12P40224 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cxcl12P40224 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Cxcl12P40224 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cxcl12P40224 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cxcl12P40224 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.78■■□□□ 1.08
Cxcl12P40224 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.78■■□□□ 1.08
Cxcl12P40224 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Cxcl12P40224 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms