Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Lire1P11260 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Lire1P11260 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
Lire1P11260 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.47■□□□□ 0.71
Lire1P11260 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.47■□□□□ 0.71
Lire1P11260 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
Lire1P11260 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Lire1P11260 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.47■□□□□ 0.71
Lire1P11260 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Lire1P11260 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lire1P11260 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.46■□□□□ 0.71
Lire1P11260 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Lire1P11260 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.46■□□□□ 0.71
Lire1P11260 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lire1P11260 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lire1P11260 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lire1P11260 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lire1P11260 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lire1P11260 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Lire1P11260 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.45■□□□□ 0.7
Lire1P11260 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Lire1P11260 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lire1P11260 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.45■□□□□ 0.7
Lire1P11260 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.44■□□□□ 0.7
Lire1P11260 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Lire1P11260 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lire1P11260 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.43■□□□□ 0.7
Lire1P11260 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lire1P11260 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.42■□□□□ 0.7
Lire1P11260 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Lire1P11260 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.42■□□□□ 0.7
Lire1P11260 Gm14117-201ENSMUST00000122417 843 ntBASIC19.42■□□□□ 0.7
Lire1P11260 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
Lire1P11260 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lire1P11260 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Lire1P11260 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lire1P11260 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lire1P11260 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.41■□□□□ 0.7
Lire1P11260 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lire1P11260 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.4■□□□□ 0.7
Lire1P11260 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lire1P11260 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lire1P11260 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC19.4■□□□□ 0.7
Lire1P11260 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Lire1P11260 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Lire1P11260 Gm9959-201ENSMUST00000068277 390 ntBASIC19.39■□□□□ 0.69
Lire1P11260 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.39■□□□□ 0.69
Lire1P11260 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lire1P11260 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Lire1P11260 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.38■□□□□ 0.69
Lire1P11260 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Lire1P11260 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lire1P11260 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Lire1P11260 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Lire1P11260 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Lire1P11260 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lire1P11260 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms