Protein–RNA interactions for Protein: O88696

Clpp, ATP-dependent Clp protease proteolytic subunit, mitochondrial, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClppO88696 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ClppO88696 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ClppO88696 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ClppO88696 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ClppO88696 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ClppO88696 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ClppO88696 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ClppO88696 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ClppO88696 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ClppO88696 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ClppO88696 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ClppO88696 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ClppO88696 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
ClppO88696 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.24■□□□□ 0.83
ClppO88696 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
ClppO88696 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ClppO88696 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.23■□□□□ 0.83
ClppO88696 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.23■□□□□ 0.83
ClppO88696 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ClppO88696 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ClppO88696 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ClppO88696 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC20.23■□□□□ 0.83
ClppO88696 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ClppO88696 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ClppO88696 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ClppO88696 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
ClppO88696 Gm13241-201ENSMUST00000094493 780 ntBASIC20.22■□□□□ 0.83
ClppO88696 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ClppO88696 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ClppO88696 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
ClppO88696 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Gm22238-201ENSMUST00000175222 88 ntBASIC20.21■□□□□ 0.83
ClppO88696 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.21■□□□□ 0.83
ClppO88696 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.21■□□□□ 0.83
ClppO88696 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
ClppO88696 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ClppO88696 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
ClppO88696 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ClppO88696 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.2■□□□□ 0.82
ClppO88696 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ClppO88696 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ClppO88696 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ClppO88696 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ClppO88696 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
ClppO88696 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ClppO88696 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.19■□□□□ 0.82
ClppO88696 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
ClppO88696 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ClppO88696 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
ClppO88696 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
ClppO88696 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.18■□□□□ 0.82
ClppO88696 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.18■□□□□ 0.82
ClppO88696 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
ClppO88696 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.18■□□□□ 0.82
ClppO88696 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.18■□□□□ 0.82
ClppO88696 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
ClppO88696 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ClppO88696 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC20.17■□□□□ 0.82
ClppO88696 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
ClppO88696 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
ClppO88696 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ClppO88696 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ClppO88696 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
ClppO88696 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ClppO88696 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
ClppO88696 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
ClppO88696 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.15■□□□□ 0.82
ClppO88696 Gm12922-201ENSMUST00000120626 809 ntBASIC20.15■□□□□ 0.82
ClppO88696 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.15■□□□□ 0.82
ClppO88696 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Gm9847-201ENSMUST00000052528 599 ntBASIC20.15■□□□□ 0.82
ClppO88696 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
ClppO88696 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.15■□□□□ 0.82
ClppO88696 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
ClppO88696 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
ClppO88696 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
ClppO88696 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
ClppO88696 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
ClppO88696 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms