Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Col5a1O88207 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col5a1O88207 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Col5a1O88207 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.28■□□□□ 0.68
Col5a1O88207 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col5a1O88207 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col5a1O88207 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col5a1O88207 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col5a1O88207 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Col5a1O88207 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.26■□□□□ 0.67
Col5a1O88207 Gm26571-201ENSMUST00000181399 666 ntBASIC19.26■□□□□ 0.67
Col5a1O88207 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col5a1O88207 Gm7291-201ENSMUST00000199147 382 ntBASIC19.26■□□□□ 0.67
Col5a1O88207 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col5a1O88207 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col5a1O88207 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.25■□□□□ 0.67
Col5a1O88207 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 Gm5874-201ENSMUST00000096101 508 ntBASIC19.25■□□□□ 0.67
Col5a1O88207 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col5a1O88207 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.24■□□□□ 0.67
Col5a1O88207 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.24■□□□□ 0.67
Col5a1O88207 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.24■□□□□ 0.67
Col5a1O88207 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col5a1O88207 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col5a1O88207 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.23■□□□□ 0.67
Col5a1O88207 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.23■□□□□ 0.67
Col5a1O88207 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC19.23■□□□□ 0.67
Col5a1O88207 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.23■□□□□ 0.67
Col5a1O88207 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
Col5a1O88207 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col5a1O88207 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.22■□□□□ 0.67
Col5a1O88207 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col5a1O88207 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col5a1O88207 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col5a1O88207 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col5a1O88207 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col5a1O88207 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col5a1O88207 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col5a1O88207 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col5a1O88207 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col5a1O88207 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col5a1O88207 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.2■□□□□ 0.66
Col5a1O88207 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Col5a1O88207 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col5a1O88207 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col5a1O88207 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col5a1O88207 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
Col5a1O88207 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col5a1O88207 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Col5a1O88207 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col5a1O88207 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col5a1O88207 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col5a1O88207 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms