Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col6a3E9PWQ3 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.7■■□□□ 1.06
Col6a3E9PWQ3 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.7■■□□□ 1.06
Col6a3E9PWQ3 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.7■■□□□ 1.06
Col6a3E9PWQ3 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.69■■□□□ 1.06
Col6a3E9PWQ3 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Col6a3E9PWQ3 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a3E9PWQ3 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a3E9PWQ3 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col6a3E9PWQ3 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.68■■□□□ 1.06
Col6a3E9PWQ3 Gm20760-201ENSMUST00000179197 648 ntBASIC21.68■■□□□ 1.06
Col6a3E9PWQ3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.68■■□□□ 1.06
Col6a3E9PWQ3 Mir6982-201ENSMUST00000184354 68 ntBASIC21.68■■□□□ 1.06
Col6a3E9PWQ3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.68■■□□□ 1.06
Col6a3E9PWQ3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC21.67■■□□□ 1.06
Col6a3E9PWQ3 Gm40848-201ENSMUST00000221998 324 ntBASIC21.67■■□□□ 1.06
Col6a3E9PWQ3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Gm7143-201ENSMUST00000222811 859 ntBASIC21.66■■□□□ 1.06
Col6a3E9PWQ3 Gm29241-201ENSMUST00000189260 1096 ntBASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.65■■□□□ 1.06
Col6a3E9PWQ3 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.64■■□□□ 1.06
Col6a3E9PWQ3 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.64■■□□□ 1.05
Col6a3E9PWQ3 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col6a3E9PWQ3 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col6a3E9PWQ3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col6a3E9PWQ3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col6a3E9PWQ3 Gm13836-201ENSMUST00000121159 501 ntBASIC21.63■■□□□ 1.05
Col6a3E9PWQ3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.62■■□□□ 1.05
Col6a3E9PWQ3 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Col6a3E9PWQ3 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col6a3E9PWQ3 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC21.59■■□□□ 1.05
Col6a3E9PWQ3 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col6a3E9PWQ3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
Col6a3E9PWQ3 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col6a3E9PWQ3 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col6a3E9PWQ3 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col6a3E9PWQ3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
Col6a3E9PWQ3 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Col6a3E9PWQ3 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.58■■□□□ 1.04
Col6a3E9PWQ3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Col6a3E9PWQ3 Gm9870-201ENSMUST00000063874 645 ntBASIC21.58■■□□□ 1.04
Col6a3E9PWQ3 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Col6a3E9PWQ3 Gm13181-201ENSMUST00000120117 1069 ntBASIC21.57■■□□□ 1.04
Col6a3E9PWQ3 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col6a3E9PWQ3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Col6a3E9PWQ3 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col6a3E9PWQ3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 Gm8520-201ENSMUST00000186517 868 ntBASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col6a3E9PWQ3 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Gm12441-201ENSMUST00000121806 588 ntBASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Col6a3E9PWQ3 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC21.54■■□□□ 1.04
Col6a3E9PWQ3 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.54■■□□□ 1.04
Col6a3E9PWQ3 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a3E9PWQ3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a3E9PWQ3 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col6a3E9PWQ3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms