Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.66■□□□□ 0.9
Chd3B1AR17 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
Chd3B1AR17 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Chd3B1AR17 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Chd3B1AR17 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.66■□□□□ 0.9
Chd3B1AR17 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Chd3B1AR17 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.65■□□□□ 0.9
Chd3B1AR17 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.65■□□□□ 0.9
Chd3B1AR17 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.65■□□□□ 0.9
Chd3B1AR17 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd3B1AR17 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Chd3B1AR17 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Chd3B1AR17 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Chd3B1AR17 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.64■□□□□ 0.9
Chd3B1AR17 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Chd3B1AR17 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.64■□□□□ 0.89
Chd3B1AR17 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.64■□□□□ 0.89
Chd3B1AR17 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Chd3B1AR17 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Chd3B1AR17 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Chd3B1AR17 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Chd3B1AR17 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Chd3B1AR17 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Chd3B1AR17 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
Chd3B1AR17 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Chd3B1AR17 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.62■□□□□ 0.89
Chd3B1AR17 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Chd3B1AR17 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Chd3B1AR17 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.61■□□□□ 0.89
Chd3B1AR17 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Chd3B1AR17 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.6■□□□□ 0.89
Chd3B1AR17 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Chd3B1AR17 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Chd3B1AR17 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chd3B1AR17 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chd3B1AR17 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.6■□□□□ 0.89
Chd3B1AR17 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.6■□□□□ 0.89
Chd3B1AR17 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Chd3B1AR17 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.59■□□□□ 0.89
Chd3B1AR17 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Chd3B1AR17 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Chd3B1AR17 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.59■□□□□ 0.89
Chd3B1AR17 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Chd3B1AR17 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Chd3B1AR17 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.58■□□□□ 0.89
Chd3B1AR17 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Chd3B1AR17 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Chd3B1AR17 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Chd3B1AR17 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Chd3B1AR17 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Chd3B1AR17 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.58■□□□□ 0.88
Chd3B1AR17 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Chd3B1AR17 Golgb1-201ENSMUST00000023534 498 ntBASIC20.58■□□□□ 0.88
Chd3B1AR17 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Chd3B1AR17 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chd3B1AR17 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Chd3B1AR17 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chd3B1AR17 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Chd3B1AR17 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Chd3B1AR17 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Chd3B1AR17 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.56■□□□□ 0.88
Chd3B1AR17 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.56■□□□□ 0.88
Chd3B1AR17 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Chd3B1AR17 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.55■□□□□ 0.88
Chd3B1AR17 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Chd3B1AR17 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chd3B1AR17 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Chd3B1AR17 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Chd3B1AR17 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.55■□□□□ 0.88
Chd3B1AR17 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Chd3B1AR17 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chd3B1AR17 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chd3B1AR17 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Chd3B1AR17 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Chd3B1AR17 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Chd3B1AR17 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Chd3B1AR17 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms