Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Trav11A0A0B4J1J9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 AC117769.4-201ENSMUST00000225679 685 ntBASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav11A0A0B4J1J9 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Gm15043-201ENSMUST00000118843 1543 ntBASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav11A0A0B4J1J9 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav11A0A0B4J1J9 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Gm43403-201ENSMUST00000198011 1786 ntBASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav11A0A0B4J1J9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav11A0A0B4J1J9 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Kdm3b-204ENSMUST00000224715 2032 ntBASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav11A0A0B4J1J9 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Iqck-206ENSMUST00000208658 2891 ntBASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Trav11A0A0B4J1J9 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Trav11A0A0B4J1J9 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav11A0A0B4J1J9 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms