Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Gm5950-201ENSMUST00000213337 772 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 AC167669.2-201ENSMUST00000224417 1620 ntBASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Vps28Q9D1C8 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Gm24255-201ENSMUST00000104481 128 ntBASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Rmrp-201ENSMUST00000157463 271 ntBASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Gm27320-201ENSMUST00000184892 109 ntBASIC12.78□□□□□ -0.36
Vps28Q9D1C8 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 AL732506.1-201ENSMUST00000226420 281 ntBASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.78□□□□□ -0.36
Vps28Q9D1C8 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Vps28Q9D1C8 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Vps28Q9D1C8 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Vps28Q9D1C8 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms