Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 AC159621.2-201ENSMUST00000223519 1326 ntBASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Rnf220Q6PDX6 Gm13615-201ENSMUST00000120242 1612 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Gm38037-201ENSMUST00000192600 1624 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Gm27306-201ENSMUST00000183970 107 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Gm37613-201ENSMUST00000195677 3580 ntBASIC11.82□□□□□ -0.52
Rnf220Q6PDX6 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm12537-201ENSMUST00000119266 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm12070-201ENSMUST00000119551 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm12671-201ENSMUST00000119978 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm13292-201ENSMUST00000120014 1000 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm12403-201ENSMUST00000121384 959 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm10359-201ENSMUST00000180167 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm12033-201ENSMUST00000180654 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm5559-201ENSMUST00000180755 1002 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm4335-201ENSMUST00000182581 1004 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 AC159114.1-201ENSMUST00000220349 266 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gm5161-201ENSMUST00000075243 853 ntBASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Rnf220Q6PDX6 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms