Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm28882-201ENSMUST00000185504 314 ntBASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm19187-201ENSMUST00000206781 892 ntBASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc88aQ5SNZ0 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 CT485607.1-201ENSMUST00000216100 85 ntBASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 AC154176.1-201ENSMUST00000225897 220 ntBASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc88aQ5SNZ0 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm24934-201ENSMUST00000103764 111 ntBASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm20392-201ENSMUST00000173047 701 ntBASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc88aQ5SNZ0 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Gm3671-201ENSMUST00000182463 1007 ntBASIC14.21□□□□□ -0.14
Ccdc88aQ5SNZ0 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms