Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm6007-201ENSMUST00000208170 823 ntBASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Upf3bQ3ULL6 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Mir1938-201ENSMUST00000158746 100 ntBASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm37201-201ENSMUST00000191845 523 ntBASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm10076-201ENSMUST00000073238 384 ntBASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.34□□□□□ -0.27
Upf3bQ3ULL6 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Upf3bQ3ULL6 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Upf3bQ3ULL6 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Upf3bQ3ULL6 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Upf3bQ3ULL6 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Upf3bQ3ULL6 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm12314-201ENSMUST00000118104 538 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm12241-201ENSMUST00000118330 726 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm9630-201ENSMUST00000178304 885 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm27243-201ENSMUST00000183964 521 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm27516-201ENSMUST00000184237 98 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm9368-201ENSMUST00000219348 831 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms