Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 AC141438.2-201ENSMUST00000215068 271 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 AC135114.1-201ENSMUST00000228682 270 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm21811-201ENSMUST00000096485 930 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Upf3aQ3ULJ3 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Mir7677-201ENSMUST00000184226 67 ntBASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Gm5455-201ENSMUST00000058710 715 ntBASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3aQ3ULJ3 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Mir680-2-201ENSMUST00000102163 110 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm23251-201ENSMUST00000103773 110 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm15432-201ENSMUST00000121106 195 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm25881-201ENSMUST00000157783 103 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 AC133602.1-201ENSMUST00000227510 509 ntBASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Upf3aQ3ULJ3 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 71.5 ms