Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC18.71■□□□□ 0.59
Col17a1Q07563 AC124613.1-201ENSMUST00000198711 88 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm7242-201ENSMUST00000221134 705 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 CT010480.2-201ENSMUST00000225424 737 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm44401-201ENSMUST00000204462 2375 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Itpa-201ENSMUST00000103193 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm15617-201ENSMUST00000118973 771 ntBASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm17207-201ENSMUST00000168686 645 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm28826-201ENSMUST00000190006 488 ntTSL 2 BASIC18.71■□□□□ 0.59
Col17a1Q07563 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 AC154347.2-201ENSMUST00000221223 715 ntTSL 3 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Rpl22l1-201ENSMUST00000043867 552 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Fthl17a-201ENSMUST00000048382 835 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col17a1Q07563 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col17a1Q07563 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC18.7■□□□□ 0.58
Col17a1Q07563 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
Col17a1Q07563 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Gm6755-201ENSMUST00000100598 864 ntBASIC18.7■□□□□ 0.58
Col17a1Q07563 Gm6740-201ENSMUST00000100617 864 ntBASIC18.7■□□□□ 0.58
Col17a1Q07563 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Cenpx-204ENSMUST00000106155 700 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Gm11993-201ENSMUST00000121861 820 ntBASIC18.7■□□□□ 0.58
Col17a1Q07563 Gm8459-201ENSMUST00000162504 760 ntBASIC18.7■□□□□ 0.58
Col17a1Q07563 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC18.7■□□□□ 0.58
Col17a1Q07563 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Tcl1b5-201ENSMUST00000000717 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col17a1Q07563 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Gm18782-201ENSMUST00000209023 1399 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Ighv14-3-201ENSMUST00000103469 399 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Gm12194-201ENSMUST00000117756 1012 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Gm14395-201ENSMUST00000120494 563 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Gm14165-201ENSMUST00000121456 952 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 CT025618.1-201ENSMUST00000227409 1279 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col17a1Q07563 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Gm43721-201ENSMUST00000199677 2313 ntBASIC18.69■□□□□ 0.58
Col17a1Q07563 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col17a1Q07563 Sorbs3-204ENSMUST00000227929 2460 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC18.68■□□□□ 0.58
Col17a1Q07563 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col17a1Q07563 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col17a1Q07563 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms