Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm8959-201ENSMUST00000213150 571 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm18730-201ENSMUST00000218038 343 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 AC138604.1-201ENSMUST00000226969 739 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm42829-201ENSMUST00000198417 2585 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Gm42928-201ENSMUST00000197338 3339 ntBASIC10.79□□□□□ -0.68
Nkx3-1P97436 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Nkx3-1P97436 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm12266-201ENSMUST00000120311 962 ntBASIC10.78□□□□□ -0.68
Nkx3-1P97436 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm20426-201ENSMUST00000173657 440 ntBASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm44136-201ENSMUST00000203819 1106 ntBASIC10.78□□□□□ -0.68
Nkx3-1P97436 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 AC107638.1-201ENSMUST00000213690 1061 ntBASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.78□□□□□ -0.68
Nkx3-1P97436 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Nkx3-1P97436 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Nkx3-1P97436 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Nkx3-1P97436 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC10.77□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms