Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC18.85■□□□□ 0.61
Cux1P53564 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Cux1P53564 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Cux1P53564 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Gm38391-201ENSMUST00000191720 4069 ntBASIC18.85■□□□□ 0.61
Cux1P53564 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cux1P53564 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
Cux1P53564 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Cux1P53564 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Cux1P53564 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm9358-201ENSMUST00000183067 927 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Gm27910-201ENSMUST00000185004 107 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 AC098716.1-201ENSMUST00000213527 703 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Gm3765-201ENSMUST00000130985 1447 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Gm28323-201ENSMUST00000186817 2499 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Cux1P53564 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Cux1P53564 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC18.84■□□□□ 0.61
Cux1P53564 Gm37028-201ENSMUST00000194276 107 ntBASIC18.84■□□□□ 0.61
Cux1P53564 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cux1P53564 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
Cux1P53564 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
Cux1P53564 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cux1P53564 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Cux1P53564 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC18.83■□□□□ 0.6
Cux1P53564 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC18.83■□□□□ 0.6
Cux1P53564 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC18.83■□□□□ 0.6
Cux1P53564 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cux1P53564 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Gm43447-201ENSMUST00000198471 1535 ntBASIC18.82■□□□□ 0.6
Cux1P53564 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC18.82■□□□□ 0.6
Cux1P53564 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cux1P53564 Gm18198-201ENSMUST00000204986 1551 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms