Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC13.18□□□□□ -0.3
Shmt1P50431 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC13.18□□□□□ -0.3
Shmt1P50431 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.18□□□□□ -0.3
Shmt1P50431 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm14109-201ENSMUST00000118814 309 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm27046-201ENSMUST00000182160 463 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm38317-201ENSMUST00000195564 343 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Gm44967-201ENSMUST00000207047 631 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.17□□□□□ -0.3
Shmt1P50431 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm24136-201ENSMUST00000083374 165 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm44260-201ENSMUST00000204946 2094 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.17□□□□□ -0.3
Shmt1P50431 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Shmt1P50431 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Shmt1P50431 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Shmt1P50431 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Gm24830-201ENSMUST00000102024 166 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm12997-201ENSMUST00000120207 640 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Gm25890-201ENSMUST00000177643 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Rnu1b2-201ENSMUST00000178073 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Rnu1b1-201ENSMUST00000178250 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm22614-201ENSMUST00000178300 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC13.16□□□□□ -0.3
Shmt1P50431 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Shmt1P50431 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Shmt1P50431 Gm22042-201ENSMUST00000082989 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm26232-201ENSMUST00000083360 166 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Rnu1b6-201ENSMUST00000083839 166 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Gm26110-201ENSMUST00000083971 165 ntBASIC13.16□□□□□ -0.3
Shmt1P50431 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Shmt1P50431 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
Shmt1P50431 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Shmt1P50431 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Shmt1P50431 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms