Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.72□□□□□ -0.05
Col3a1P08121 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 Gm9279-201ENSMUST00000223175 1606 ntBASIC14.72□□□□□ -0.05
Col3a1P08121 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.71□□□□□ -0.05
Col3a1P08121 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.71□□□□□ -0.05
Col3a1P08121 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Col3a1P08121 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC14.71□□□□□ -0.05
Col3a1P08121 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC14.71□□□□□ -0.05
Col3a1P08121 Ighv1-48-201ENSMUST00000191795 294 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm18893-201ENSMUST00000198416 943 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Mir7686-201ENSMUST00000200604 57 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Gm17931-201ENSMUST00000208132 634 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC14.71□□□□□ -0.05
Col3a1P08121 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Col3a1P08121 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.71□□□□□ -0.05
Col3a1P08121 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col3a1P08121 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.71□□□□□ -0.06
Col3a1P08121 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC14.71□□□□□ -0.06
Col3a1P08121 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Col3a1P08121 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col3a1P08121 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.06
Col3a1P08121 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.71□□□□□ -0.06
Col3a1P08121 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC14.7□□□□□ -0.06
Col3a1P08121 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Col3a1P08121 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Gm5706-201ENSMUST00000181525 993 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Gm44124-201ENSMUST00000204159 472 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 Gm44551-201ENSMUST00000208804 171 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 Gm1821-202ENSMUST00000227415 750 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Col3a1P08121 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.7□□□□□ -0.06
Col3a1P08121 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Col3a1P08121 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Col3a1P08121 AC126257.1-201ENSMUST00000213195 1536 ntBASIC14.7□□□□□ -0.06
Col3a1P08121 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Col3a1P08121 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.7□□□□□ -0.06
Col3a1P08121 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col3a1P08121 Gm15004-201ENSMUST00000119192 630 ntBASIC14.69□□□□□ -0.06
Col3a1P08121 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col3a1P08121 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.69□□□□□ -0.06
Col3a1P08121 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col3a1P08121 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col3a1P08121 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC14.69□□□□□ -0.06
Col3a1P08121 Gm9797-202ENSMUST00000218003 294 ntBASIC14.69□□□□□ -0.06
Col3a1P08121 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col3a1P08121 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.69□□□□□ -0.06
Col3a1P08121 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Col3a1P08121 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col3a1P08121 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Col3a1P08121 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms